Copy Numbers of Genes in prokaryotes


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Documentation for package ‘CNOGpro’ version 1.1

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CNOGpro-package CNOGpro - Copy Numbers of Genes in Prokaryotes
carsonella CNV experiment of C. Carsonella ruddy (artificial data)
CNOGpro Set up a new CNOGpro experiment
normalizeGC Normalization of read count data by GC content
plotCNOGpro Plots the results of a 'CNOGpro' experiment
printCNOGpro Prints the results of a 'CNOGpro' experiment
runBootstrap Gene copy numbers with confidence intervals through bootstrapping
runHMM Copy number variation inference through a Hidden Markov Model
store Store the results of a 'CNOGpro' copy number experiment
summaryCNOGpro Summarize the 'CNOGpro' experiment