| gg.rank.plot {CJIVE} | R Documentation |
Function for plotting selected joint ranks
Description
Graphically displays the count of joint ranks selected by each method employed in the simulation study described in the CJIVE manuscript
Usage
gg.rank.plot(rank.dat, cols, show.legend = FALSE, text.size, num.sims)
Arguments
rank.dat |
data frame expected to be built with the functions dplyr::count and tidyr::complete, which should include the following variables Rank - numeric values of the rank selected by each method in each replicate simulation n - the number of times this value was selected as the rank Type - the subspace for which the norm is given (i.e., joint/individual score/loading for dataset X1 or X2 (except for joint scores)) Method - the method by which the subspace was estimated, e.g. CJIVE, AJIVE, R.JIVE JVE_1 and JVE_2 - labels describing the proportion of joint variation explained in each dataset (and typically the number of variables in dataset X2) |
cols |
a vector of colors, must have length equal to the number of methods used in the simulation |
show.legend |
logical (TRUE/FALSE) for whether a legend should be included in the plot. Default is FALSE |
text.size |
numeric value for the font size |
num.sims |
numeric value for the number of replicates evaluated in each full combination of experimental settings |
Value
graphical display (via ggplot2)