| scatterPlot {CIDER} | R Documentation |
Scatterplot of a Seurat object based on dimension reduction.
scatterPlot(
seu,
reduction,
colour.by,
colvec = NULL,
title = NULL,
sort.by.numbers = TRUE,
viridis_option = "B"
)
seu |
Seurat S4 object after the step of 'getIDER'. Required. |
reduction |
Character. The dimension reduction used to plot. Common options: "pca", "tsne", "umap". The availability of dimension reduction can be checked by 'Reductions(seu)'. |
colour.by |
Character. One of the column names of 'seu@meta.data'. Can be either discreet or continuous variables. |
colvec |
A vector of Hex colour codes. If no value is given (default), a vector of 74 colours will be used. |
title |
Character. Title of the figure. |
sort.by.numbers |
Boolean. Whether to sort the groups by the number of cells.(Default: True) |
viridis_option |
viridis_option. (Default: B) |
a scatter plot