estimateProb {CIDER} | R Documentation |
Estimate the empirical probability of whether two set of cells from distinct batches belong to the same population
estimateProb(seu, ider, n_size = 40, n.perm = 5, verbose = FALSE)
seu |
A Seurat object |
ider |
The output list of function 'getIDEr'. |
n_size |
Number of cells per group used to compute the similarity. Default: 40 |
n.perm |
Numeric. Time of permutations. |
verbose |
Boolean. Print out progress or not. (Default: FALSEW) |
A Seurat object with IDER-based similarity and empirical probability of rejection
Usage of this function should be after hdbscan.seurat
and getIDEr