calculateDistMatOneModel |
Calculate distance matrix with in one model |

cosineSimilarityR |
cosine similarity in R |

downsampling |
Downsampling cells |

estimateProb |
Estimate the empirical probability of whether two set of cells from distinct batches belong to the same population |

finalClustering |
Final clustering step for meta-clustering |

gatherInitialClusters |
Gather initial cluster names |

getDistMat |
Calculate the Similarity Matrix |

getGroupFit |
Calculate IDER-based similarity between two groups |

getIDEr |
Compute IDER-based similarity |

hdbscan.seurat |
Initial clustering for evaluating integration |

initialClustering |
Initial clustering |

measureSimilarity |
Measure similarity between two vectors |

mergeInitialClusters |
Merge Initial Clusters |

pancreas |
Pancreatic scRNA-Seq data. |

plotDistMat |
Plot Similarity Matrix with pheatmap |

plotHeatmap |
Plot Heatmap for the IDER-based similarity matrix |

plotNetwork |
Plot Network Graph |

scatterPlot |
Scatterplot by a selected feature |