calculateDistMatOneModel | Calculate distance matrix with in one model |
cosineSimilarityR | cosine similarity in R |
downsampling | Downsampling cells |
estimateProb | Estimate the empirical probability of whether two set of cells from distinct batches belong to the same population |
finalClustering | Final clustering step for meta-clustering |
gatherInitialClusters | Gather initial cluster names |
getDistMat | Calculate the Similarity Matrix |
getGroupFit | Calculate IDER-based similarity between two groups |
getIDEr | Compute IDER-based similarity |
hdbscan.seurat | Initial clustering for evaluating integration |
initialClustering | Initial clustering |
measureSimilarity | Measure similarity between two vectors |
mergeInitialClusters | Merge Initial Clusters |
pancreas | Pancreatic scRNA-Seq data. |
plotDistMat | Plot Similarity Matrix with pheatmap |
plotHeatmap | Plot Heatmap for the IDER-based similarity matrix |
plotNetwork | Plot Network Graph |
scatterPlot | Scatterplot by a selected feature |