selection_localized_genes {CIARA}

selection_localized_genes

Description

selection_localized_genes

Usage

selection_localized_genes(
  norm_counts,
  localized_genes,
  min_number_cells = 4,
  max_number_genes = 10
)

Arguments

norm_counts

Norm count matrix (genes X cells).

localized_genes

vector of highly localized genes as provided by the last element of the list given as output from CIARA_mixing_final.

min_number_cells

Minimum number of cells where a genes must be expressed (> 0).

max_number_genes

Maximum number of genes to show for each cell in the interactive plot from plot_interactive.

Value

Character vector where each entry contains the name of the top max_number_genes for the corresponding cell.

Author(s)

Gabriele Lubatti [e-mail]