plot_interactive {CIARA} | R Documentation |
It shows in an interactive plot which are the highly localized genes in each cell. It is based on plotly library
plot_interactive(
coordinate_umap,
color,
text,
min_x = NULL,
max_x = NULL,
min_y = NULL,
max_y = NULL
)
coordinate_umap |
Data frame with dimensionality reduction coordinates. Number of rows must be equal to the number of cells |
color |
vector of length equal to n_rows in coordinate_umap.Each cell will be coloured following a gradient according to the corresponding value of this vector. |
text |
Character vector specifying the highly localized genes in each cell. It is the output from selection_localized_genes. |
min_x |
Set the min limit on the x axis. |
max_x |
Set the max limit on the x axis. |
min_y |
Set the min limit on the y axis. |
max_y |
Set the min limit on the y axis. |
plotly object given by plot_ly function (from library plotly).
Gabriele Lubatti gabriele.lubatti@helmholtz-muenchen.de