get_background_full {CIARA}

get_background_full

Description

get_background_full

Usage

get_background_full(
  norm_matrix,
  threshold = 1,
  n_cells_low = 3,
  n_cells_high = 20
)

Arguments

norm_matrix

Norm count matrix (n_genes X n_cells).

threshold

threshold in expression for a given gene

n_cells_low

minimum number of cells where a gene is expressed at a level above threshold

n_cells_high

maximum number of cells where a gene is expressed at a level above threshold

Value

Character vector with all genes expressed at a level higher than threshold in a number of cells between n_cells and n_cells_high.

Author(s)

Gabriele Lubatti [e-mail]