cluster_analysis_sub {CIARA} | R Documentation |
cluster_analysis_sub
Description
cluster_analysis_sub
Usage
cluster_analysis_sub(
raw_counts,
resolution,
neighbors,
max_dimension,
name_cluster
)
Arguments
raw_counts |
Raw count matrix (n_genes X n_cells). |
resolution |
Numeric value specifying the parameter resolution used in the Seurat function FindClusters. |
neighbors |
Numeric value specifying the parameter k.param in the Seurat function FindNeighbors |
max_dimension |
Numeric value specifying the maximum number of the PCA dimensions used in the parameter dims for the Seurat function FindNeighbors |
name_cluster |
Character.Name of the original cluster for which the sub clustering is done. |
Value
Seurat object including raw and normalized counts matrices and cluster result.
Author(s)
Gabriele Lubatti gabriele.lubatti@helmholtz-muenchen.de
See Also
https://www.rdocumentation.org/packages/Seurat/versions/4.0.1/topics/RunPCA https://www.rdocumentation.org/packages/Seurat/versions/4.0.1/topics/FindVariableFeatures
[Package CIARA version 0.1.0 Index]