gene2rpkm {CDSeq}R Documentation

gene2rpkm outputs the rpkm normalizations of the CDSeq-estimated GEPs. gene2rpkm outputs the rpkm normalizations of the CDSeq-estimated GEPs.

Description

gene2rpkm outputs the rpkm normalizations of the CDSeq-estimated GEPs. gene2rpkm outputs the rpkm normalizations of the CDSeq-estimated GEPs.

Usage

gene2rpkm(gene_rate, gene_effective_length, cell_line_counts)

Arguments

gene_rate

CDSeq-estimated GEP normalized by gene length.

gene_effective_length

gene effective length which is the gene length minus the read length plus one.

cell_line_counts

RNA-Seq read counts data of cell lines

Value

gene2rpkm returns rpkm normalization of the CDSeq-estimated GEPs.


[Package CDSeq version 1.0.8 Index]