cellTypeAssign {CDSeq}R Documentation

Assign cell types using correlation matrix computed using cell-type-specific GEPs and reference GEPs. cellTypeAssign assigns CDSeq-identified cell types to reference profile.

Description

Assign cell types using correlation matrix computed using cell-type-specific GEPs and reference GEPs. cellTypeAssign assigns CDSeq-identified cell types to reference profile.

Usage

cellTypeAssign(corMat, threshold = 0.8)

Arguments

corMat

correlation matrix between CDSeq-estimated GEPs and reference GEPs.

threshold

only the correlations that are above threshold will be considered.

Value

cellTypeAssign returns a vector of cell type assignment to the reference profile.


[Package CDSeq version 1.0.8 Index]