quant {CB2}R Documentation

A C++ function to quantify sgRNA abundance from NGS samples.

Description

A C++ function to quantify sgRNA abundance from NGS samples.

Usage

quant(ref_path, fastq_path, verbose = FALSE)

Arguments

ref_path

the path of the annotation file and it has to be a FASTA formatted file.

fastq_path

a list of the FASTQ files.

verbose

Display some logs during the quantification if it is set to 'true'.


[Package CB2 version 1.3.4 Index]