retrieve_calanguize_genomes {CALANGO} | R Documentation |
Retrieve calanguize_genomes script from the Github repository
Description
This script downloads the *calanguize_genomes.pl* Perl script from the repository, together with associated README instructions for using the script, managing dependencies, etc. It will extract the data into a folder containing everything that is needed for preparing data for using CALANGO.
Usage
retrieve_calanguize_genomes(
target.dir,
method = "auto",
unzip = getOption("unzip")
)
Arguments
target.dir |
path to the folder where the files will be saved ( accepts relative and absolute paths) |
method |
Method to be used for downloading files. Current download
methods are "internal", "wininet" (Windows only) "libcurl", "wget" and
"curl", and there is a value "auto": see _Details_ and _Note_ in the
documentation of |
unzip |
The unzip method to be used. See the documentation of
|
Details
If the 'target.dir' provided does not exist it is created (recursively) by the function.
Value
No return value, called for side effects (see Description).
Examples
## Not run:
CALANGO::retrieve_calanguize_genomes(target.dir = "./data")
## End(Not run)