install_bioc_dependencies {CALANGO} | R Documentation |
Install Bioconductor dependencies
Description
This function installs the latest versions of all Bioconductor packages required for the report generation, namely:
AnnotationDbi
KEGGREST
GO.db
Usage
install_bioc_dependencies(bioc.args = list(), force = FALSE)
Arguments
bioc.args |
list containing further arguments to be passed down to 'BiocManager::install()'. |
force |
logical: reinstall already-installed packages? |
Details
It is essential that these Bioconductor packages be installed for CALANGO to work properly. It uses 'BiocManager::install()' for installing Bioconductor packages. Further arguments to this function are passed as a list.
Value
No return value, called for side effects.
Examples
## Not run:
install_bioc_dependencies()
## End(Not run)
[Package CALANGO version 1.0.16 Index]