jg.plotMA {Brundle}R Documentation

jg.plotMA

Description

This function plots both the control and experimental data on an MA plot. It also allows for the user to provide a normalisation coefficient for the data.

Usage

jg.plotMA(jg.experimentPeakset, jg.controlPeakset, jg.untreatedNames,
  jg.treatedNames, jg.coefficient)

Arguments

jg.experimentPeakset

is the peakset of the experimental data extracted from a DiffBind ojbect with jg.dbaGetPeakset

jg.controlPeakset

is the peakset of the control data extracted from a DiffBind ojbect with jg.dbaGetPeakset

jg.untreatedNames

is a list of sample names for the control or untreated conditions

jg.treatedNames

is a list of sample samples for the treated conditions

jg.coefficient

is a normalisation coefficient for the data that can be generated via the pipeline. Can be set to 1 to view before normalisation.


[Package Brundle version 1.0.9 Index]