CNA {BoutrosLab.plotting.general} | R Documentation |
Copy number aberration (CNA) data from colon cancer patients
Description
CNA calls from 30 genes across 58 colon cancer patients.
Additional data on the patient samples is found in the patient
dataset.
The same patient samples are described in the microarray
and SNV
datasets.
Usage
CNA
Format
A data frame with 58 columns and 30 rows. The columns indicate the patient sample, and the rows indicate the gene. The contents of the data frame are encoded such that 0 indicates no CNA, -1 indicates a CNA loss, and 1 indicates a CNA gain.
Author(s)
Christine P'ng
Examples
data(CNA);
create.dotmap(
# filename = tempfile(pattern = 'Using_CNA_dataset', fileext = '.tiff'),
x = CNA[1:15, 1:15],
main = 'CNA data',
xaxis.cex = 0.8,
yaxis.cex = 0.8,
xaxis.rot = 90,
description = 'Dotmap created by BoutrosLab.plotting.general',
resolution = 50
);
[Package BoutrosLab.plotting.general version 7.1.0 Index]