getBasinOfAttraction {BoolNet} | R Documentation |
Get states in basin of attraction
Description
Extracts information on all states in the basin of a supplied attractor
Usage
getBasinOfAttraction(attractorInfo, attractorNo)
Arguments
attractorInfo |
An object of class |
attractorNo |
The index of the attractor in |
Details
The function outputs a transition table containing only the states that are contained in the basin of attraction, and displays additional information on these states. If attractorInfo
is the result of an exhaustive synchronous attractor search, the complete basin of attraction is returned. If attractorInfo
is the result of a heuristic synchronous search, there is no guarantee that the complete basin of attraction is returned, as only the calculated states are included. Asynchronous search results are not supported, as no transition table is calculated.
Value
Returns a generic dataframe of the class TransitionTable
. For n genes, the first n columns code for the original state, i.e. each column represents the value of one gene. The next n columns code for the successive state after a transition. The column attractorAssignment
indicates the attractor to the state is assigned (in this case, attractorNo
). If this information is available, the column stepsToAttractor
indicates how many transitions are needed from the original state to the attractor.
The TransitionTable
class supports pretty printing using the print
method.
See Also
getStateSummary
, getTransitionTable
, getAttractors
, simulateSymbolicModel
Examples
## Not run:
# load example data
data(cellcycle)
# get attractors
attractors <- getAttractors(cellcycle)
# print basin of first attractor
print(getBasinOfAttraction(attractors, 1))
## End(Not run)