| BP_LnLCompactness {BoneProfileR} | R Documentation |
Estimation of the likelihood of a bone section
Description
Estimation of the compactness of a bone section.
Usage
BP_LnLCompactness(
par,
bone = NULL,
data_m = NULL,
data_nm = NULL,
distance.center = NULL,
fixed.parameters = NULL,
analysis = 1
)
Arguments
par |
Parameters of the model |
bone |
The bone image to be used |
data_m |
Number of mineralized pixels |
data_nm |
Number of non-mineralized pixels |
distance.center |
Distances to the center |
fixed.parameters |
Fixed parameters of the model |
analysis |
Name or rank of analysis |
Details
BP_LnLCompactness estimates likelihood of model of a bone section
Value
The -Ln L
Author(s)
Marc Girondot marc.girondot@gmail.com
See Also
Other BoneProfileR:
BP_AutoFit(),
BP_ChooseBackground(),
BP_ChooseCenter(),
BP_ChooseForeground(),
BP_DetectBackground(),
BP_DetectCenters(),
BP_DetectForeground(),
BP_DuplicateAnalysis(),
BP_EstimateCompactness(),
BP_FitBayesianCompactness(),
BP_FitMLCompactness(),
BP_FitMLRadialCompactness(),
BP_GetFittedParameters(),
BP_ListAnalyses(),
BP_OpenImage(),
BP_Report(),
Erinaceus_europaeus,
plot.BoneProfileR(),
summary.BoneProfileR()
Examples
## Not run:
# Not run:
path_Hedgehog <- system.file("extdata", "Erinaceus_europaeus_fem_2-1_small.png",
package = "BoneProfileR")
bone <- BP_OpenImage(file=path_Hedgehog)
bone <- BP_DetectBackground(bone=bone)
bone <- BP_DetectForeground(bone=bone)
bone <- BP_DetectCenters(bone=bone)
bone <- BP_EstimateCompactness(bone)
plot(bone)
## End(Not run)