GenerateSCReference {BisqueRNA}

Generate reference profile for cell types identified in single-cell data

Description

Averages expression within each cell type across all samples to use as reference profile.

Usage

GenerateSCReference(sc.eset, cell.types)

Arguments

sc.eset

Expression Set with single-cell data

cell.types

A character string. Name of phenoData attribute in sc.eset that indicates cell type

Value

sc.ref Matrix. Reference profile with number of gene rows by number of cell types columns.