CalculateSCCellProportions {BisqueRNA}

Calculate cell proportions based on single-cell data

Description

Returns proportion of each cell type out of total cells for each individual in the single-cell Expression Set

Usage

CalculateSCCellProportions(sc.eset, subject.names, cell.types)

Arguments

sc.eset

Expression Set with single-cell data

subject.names

A character string. Name of phenoData attribute in sc.eset that indicates individual ID.

cell.types

A character string. Name of phenoData attribute in sc.eset that indicates cell type

Value

sc.props Matrix. Cell proportions with number of cell types rows by number of individuals columns