.perform_grouping {Bioi}

Return the group number for each localization.

Description

Group PALM/iPALM localizations based on their physical separation distance

Usage

.perform_grouping(input, critDist, use_prog_bar = TRUE)

Arguments

input

A numeric matrix where each row is a localization and each column is a spatial axis.

critDist

The critical distance for which localizations nearer than this distance are deemed part of the same group.

use_prog_bar

TRUE/FALSE indicating whether a progress bar should be used. This is only available when run_parallel is FALSE.

Details

PALM/iPALM data results in a list of spatial coordinates for fluorophore localizations. This function groups nearby localizations if they are within the provided critical distance from each other.

Author(s)

Zach Colburn