BioCircosBarTrack {BioCircos} | R Documentation |
Create a track with a bar plot to be added to a BioCircos tracklist
Description
Bins are defined by a genomic range and associated with a numerical value
Usage
BioCircosBarTrack(trackname, chromosomes, starts, ends, values,
labels = "", maxRadius = 0.9, minRadius = 0.5, color = "#40B9D4",
range = 0, ...)
Arguments
trackname |
The name of the new track. |
chromosomes |
A vector containing the chromosomes on which each bar is found. Values should match the chromosome names given in the genome parameter of the BioCircos function. |
starts , ends |
Vectors containing the coordinates on which each bin begins or ends. |
values |
A vector of numerical values associated with each bin, used to determine the height of each bar on the track. |
labels |
One or multiple character objects to label each bar. |
minRadius , maxRadius |
Where the track should begin and end, in proportion of the inner radius of the plot. |
color |
The color for the bars, in hexadecimal RGB format. |
range |
Vector of values to be mapped to the minimum and maximum radii of the track. Default to 0, mapping the minimal and maximal values input in the values parameter. |
... |
Ignored |
Examples
BioCircos(BioCircosBarTrack('BarTrack', chromosomes = 1:3, starts = 1e+7*2:4, ends = 2.5e+7*2:4,
values = 1:3, labels = c('A ', 'B ', 'C '), range = c(0,4)) + BioCircosBackgroundTrack('BGTrack'))