prob_association_m {BeviMed}  R Documentation 
Calculate probability of association for one mode of inheritance
Description
Equivalent to prob_association
where the prior probability of one mode of inheritance is 1. This function is faster, as it only calls bevimed_m
once.
Usage
prob_association_m(y, min_ac = 1L, prior_prob_association = 0.01, ...)
Arguments
y 
Logical vector of case (TRUE ) control (FALSE ) status.

min_ac 
Integer vector with a length equalling the number of individuals or length 1 (in which case the given value is used for all individuals) giving the minimum number of alleles at pathogenic variant sites each individual requires in order to classify as having a ‘pathogenic allele configuration’. Thus, this parameter encodes the mode of inheritance. For instance, setting this parameter to 1 corresponds to dominant inheritance. If there are differences in ploidy between individuals in the locus, it is necessary to set it on an sample level basis  e.g. to ensure sex is accounted for if the locus lies on the X chromosome.

prior_prob_association 
The prior probability of association.

... 
Other arguments to pass to log_BF .

Value
Probability value.
See Also
log_BF
, prob_association
, bevimed_m
[Package
BeviMed version 5.8
Index]