| testChecklist {BeeBDC} | R Documentation |
An example of the beesChecklist file
Description
A small test checklist file for package tests. This dataset was built by filtering the checklist data from the three test datasets, beesFlagged, beesRaw, bees3sp.
Usage
data("testChecklist", package = "BeeBDC")
Format
An object of class "tibble"
- validName
The valid scientificName as it should occur in the scientificName column.
- DiscoverLife_name
The full country name as it occurs on Discover Life.
- rNaturalEarth_name
Country name from rnaturalearth's name_long and type = "map_units".
- shortName
A short version of the country name.
- continent
The continent where that country is found.
- DiscoverLife_ISO
The ISO country name as it occurs on Discover Life.
- Alpha-2
Alpha-2 from rnaturalearth.
- iso_a3_eh
iso_a3_eh from rnaturalearth.
- official
Official country name = "yes" or only a Discover Life name = "no".
- Source
A text strign denoting the source or author of the name-country pair.
- matchCertainty
Quality of the name's match to the Discover Life checklist.
- canonical
The valid species name without scientificNameAuthority.
- canonical_withFlags
The validName without the scientificNameAuthority but with Discover Life flags.
- family
Bee family.
- subfamily
Bee subfamily.
- genus
Bee genus.
- subgenus
Bee subgenus.
- infraspecies
Bee infraSpecificEpithet.
- species
Bee specificEpithet.
- scientificNameAuthorship
Bee scientificNameAuthorship.
- taxon_rank
Rank of the taxon name.
- Notes
Discover Life country name notes.
References
This dataset is a subset of the beesChecklist file described in: Dorey, J.B., Fischer, E.E., Chesshire, P.R., Nava-Bolaños, A., O’Reilly, R.L., Bossert, S., Collins, S.M., Lichtenberg, E.M., Tucker, E., Smith-Pardo, A., Falcon-Brindis, A., Guevara, D.A., Ribeiro, B.R., de Pedro, D., Hung, J.K.-L., Parys, K.A., McCabe, L.M., Rogan, M.S., Minckley, R.L., Velzco, S.J.E., Griswold, T., Zarrillo, T.A., Jetz, W., Sica, Y.V., Orr, M.C., Guzman, L.M., Ascher, J., Hughes, A.C. & Cobb, N.S. (2023) A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Scientific Data, 10, 1–17. https://www.doi.org/10.1038/S41597-023-02626-W
Examples
beesRaw <- BeeBDC::testChecklist
head(testChecklist)