R: A wrapper for all of the data readr

readr_BeeBDC {BeeBDC}

R Documentation

A wrapper for all of the data readr_functions

Description

Read in a variety of data files that are specific to certain smaller data providers. There is an internal readr function for each dataset and each one of these functions is called by readr_BeeBDC. While these functions are internal, they are displayed in the documentation of readr_BeeBDC for clarity.

Usage

readr_BeeBDC(
  dataset = NULL,
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = NULL
)

readr_EPEL(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_ASP(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_BMin(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_BMont(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_Ecd(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_Gai(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_CAES(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "Sheet1"
)

readr_KP(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_EcoS(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_GeoL(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_EaCO(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_MABC(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "Hoja1"
)

readr_Col(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = sheet
)

readr_FSCA(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_SMC(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_Bal(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "animal_data"
)

readr_Lic(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_Arm(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "Sheet1"
)

readr_Dor(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_MEPB(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = NULL
)

readr_BBD(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_MPUJ(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = sheet
)

readr_STRI(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_PALA(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_JoLa(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = c("pre-1950", "post-1950")
)

readr_VicWam(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "Combined"
)

Arguments

`dataset`	Character. The name of the dataset to be read in. For example readr_CAES can be called using "readr_CAES" or "CAES". This is not caps sensitive.
`path`	A character path. The path to the directory containing the data.
`inFile`	Character or character path. The name of the file itself (can also be the remainder of a path including the file name).
`outFile`	Character or character path. The name of the Darwin Core format file to be saved.
`dataLicense`	Character. The license to accompany each record in the Darwin Core 'license' column.
`sheet`	A character String. For those datasets read from an .xlsx format, provide the sheet name. NOTE: This will be ignored for .csv readr_ functions and required for .xlsx readr_ functions.

Details

This function wraps several internal readr functions. Users may call readr_BeeBDC and select the dataset name to import a certain dataset. These datasets include:

Excel (.xlsx) formatted datasets: CAES, MABC, Col, Bal, MEPB, MUPJ, Arm, JoLa, and VicWam.

CSV (.csv) formatted datasets: EPEL, ASP, BMin, BMont, Ecd, Gai, KP, EcoS, GeoL, EaCo, FSCA, SMC, Lic, Dor, BBD, STRI, and PALA

See Dorey et al. 2023 BeeBDC... for further details.

Value

A data frame that is in Darwin Core format.

Functions

readr_EPEL(): Reads specific data files into Darwin Core format
readr_ASP(): Reads specific data files into Darwin Core format
readr_BMin(): Reads specific data files into Darwin Core format
readr_BMont(): Reads specific data files into Darwin Core format
readr_Ecd(): Reads specific data files into Darwin Core format
readr_Gai(): Reads specific data files into Darwin Core format
readr_CAES(): Reads specific data files into Darwin Core format
readr_KP(): Reads specific data files into Darwin Core format
readr_EcoS(): Reads specific data files into Darwin Core format
readr_GeoL(): Reads specific data files into Darwin Core format
readr_EaCO(): Reads specific data files into Darwin Core format
readr_MABC(): Reads specific data files into Darwin Core format
readr_Col(): Reads specific data files into Darwin Core format
readr_FSCA(): Reads specific data files into Darwin Core format
readr_SMC(): Reads specific data files into Darwin Core format
readr_Bal(): Reads specific data files into Darwin Core format
readr_Lic(): Reads specific data files into Darwin Core format
readr_Arm(): Reads specific data files into Darwin Core format
readr_Dor(): Reads specific data files into Darwin Core format
readr_MEPB(): Reads specific data files into Darwin Core format
readr_BBD(): Reads specific data files into Darwin Core format
readr_MPUJ(): Reads specific data files into Darwin Core format
readr_STRI(): Reads specific data files into Darwin Core format
readr_PALA(): Reads specific data files into Darwin Core format
readr_JoLa(): Reads specific data files into Darwin Core format
readr_VicWam(): Reads specific data files into Darwin Core format

Examples

## Not run: 
# An example using a .xlsx file
Arm_Data <- readr_BeeBDC(
    dataset = "Arm",
    path = paste0(tempdir(), "/Additional_Datasets"),
    inFile = "/InputDatasets/Bee database Armando_Final.xlsx",
    outFile = "jbd_Arm_Data.csv",
    sheet = "Sheet1",
    dataLicense = "https://creativecommons.org/licenses/by-nc-sa/4.0/")
    
    
    # An example using a .csv file
EPEL_Data <- readr_BeeBDC(
  dataset = "readr_EPEL",
  path = paste0(tempdir(), "/Additional_Datasets"),
  inFile = "/InputDatasets/bee_data_canada.csv",
  outFile = "jbd_EPEL_data.csv",
  dataLicense = "https://creativecommons.org/licenses/by-nc-sa/4.0/")

## End(Not run)

[Package BeeBDC version 1.1.1 Index]