BayesTools_model_tables {BayesTools}

Create BayesTools model tables

Description

Creates model summary based on a model objects or provides estimates table for a runjags fit.

Usage

model_summary_table(
  model,
  model_description = NULL,
  title = NULL,
  footnotes = NULL,
  warnings = NULL,
  remove_spike_0 = TRUE,
  short_name = FALSE,
  formula_prefix = TRUE,
  remove_parameters = NULL
)

runjags_estimates_table(
  fit,
  transformations = NULL,
  title = NULL,
  footnotes = NULL,
  warnings = NULL,
  conditional = FALSE,
  remove_spike_0 = TRUE,
  transform_factors = FALSE,
  transform_orthonormal = FALSE,
  formula_prefix = TRUE,
  remove_inclusion = FALSE,
  remove_parameters = NULL
)

runjags_inference_table(
  fit,
  title = NULL,
  footnotes = NULL,
  warnings = NULL,
  formula_prefix = TRUE
)

JAGS_estimates_table(
  fit,
  transformations = NULL,
  title = NULL,
  footnotes = NULL,
  warnings = NULL,
  conditional = FALSE,
  remove_spike_0 = TRUE,
  transform_factors = FALSE,
  transform_orthonormal = FALSE,
  formula_prefix = TRUE,
  remove_inclusion = FALSE,
  remove_parameters = NULL
)

JAGS_inference_table(
  fit,
  title = NULL,
  footnotes = NULL,
  warnings = NULL,
  formula_prefix = TRUE
)

JAGS_summary_table(
  model,
  model_description = NULL,
  title = NULL,
  footnotes = NULL,
  warnings = NULL,
  remove_spike_0 = TRUE,
  short_name = FALSE,
  formula_prefix = TRUE,
  remove_parameters = NULL
)

model_summary_empty_table(
  model_description = NULL,
  title = NULL,
  footnotes = NULL,
  warnings = NULL
)

runjags_estimates_empty_table(title = NULL, footnotes = NULL, warnings = NULL)

runjags_inference_empty_table(title = NULL, footnotes = NULL, warnings = NULL)

JAGS_estimates_empty_table(title = NULL, footnotes = NULL, warnings = NULL)

JAGS_inference_empty_table(title = NULL, footnotes = NULL, warnings = NULL)

stan_estimates_table(
  fit,
  transformations = NULL,
  title = NULL,
  footnotes = NULL,
  warnings = NULL
)

Arguments

model

model object containing a list of priors and inference object, The inference must be a named list with information about the model: model number m_number, marginal likelihood marglik, prior and posterior probability prior_prob and post_prob, and model inclusion Bayes factor inclusion_BF

model_description

named list with additional description to be added to the table

title

title to be added to the table

footnotes

footnotes to be added to the table

warnings

warnings to be added to the table

remove_spike_0

whether prior distributions equal to spike at 0 should be removed from the prior_list

short_name

whether the prior distribution names should be shortened. Defaults to FALSE.

formula_prefix

whether the parameter prefix from formula should be printed. Defaults to TRUE.

remove_parameters

parameters to be removed from the summary. Defaults to NULL, i.e., including all parameters.

fit

runjags model fit

transformations

named list of transformations to be applied to specific parameters

conditional

summarizes estimates conditional on being included in the model for spike and slab priors. Defaults to FALSE.

transform_factors

whether factors with orthonormal/meandif prior distribution should be transformed to differences from the grand mean

transform_orthonormal

(to be depreciated) whether factors with orthonormal prior distributions should be transformed to differences from the grand mean

remove_inclusion

whether estimates of the inclusion probabilities should be excluded from the summary table. Defaults to FALSE.

Value

model_summary_table returns a table with overview of the fitted model, runjags_estimates_table returns a table with MCMC estimates, and runjags_estimates_empty_table returns an empty estimates table. All of the tables are objects of class 'BayesTools_table'.

See Also

BayesTools_ensemble_tables