Bayesian Analysis of Significantly Mutated Genes in Cancer


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Documentation for package ‘BaySIC’ version 1.0

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BaySIC-package Bayesian Analysis of Significantly Mutated Genes in Cancer
BaySIC Bayesian Analysis of Significantly Mutated Genes in Cancer
baysic.data Organizes data for BaySIC functions
baysic.fit Fits BaySIC BMR model
baysic.test BaySIC Evaluation of SMGs
BMR.plot Visualize Sequence Context BMRs
ccds.18 CCDS Reference Data (Build hg18)
ccds.19 CCDS Reference Data (Build hg19)
example.dat Example Mutation Data (Build hg19)
fn.cat Collapses SNV and reference data into sequence mutation categories
fuzzy.FDR.approx Generate Approximate Fuzzy Rejection Probabilites
revcomp DNA Reverse Complementation
write.baysic Write BaySIC JAGS model files