redEval {BacArena}R Documentation

Function for reducing the size of an Eval object by collapsing the medium concentrations

Description

The generic function redEval reduces the object size of an Eval object.

Usage

redEval(object, time = "all")

## S4 method for signature 'Eval'
redEval(object, time = 1:length(object@medlist))

Arguments

object

An object of class Eval.

time

A number giving the simulation step of interest.

Details

The function redEval can be used to reduce the size of an Eval object from a simulation step.

Value

Returns an object of class Arena containing the organisms and substance conditions in simulation step time.

See Also

Eval-class and Arena-class

Examples

data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
eval_reduce <- redEval(eval,5)

[Package BacArena version 1.8.2 Index]