getCorrM {BacArena} | R Documentation |
The generic function getCorrM
returns the correlation matrix of several objects.
getCorrM(object, reactions = TRUE, bacs = TRUE, substrates = TRUE) ## S4 method for signature 'Eval' getCorrM(object, reactions = TRUE, bacs = TRUE, substrates = TRUE)
object |
An object of class Eval. |
reactions |
A boolean indicating whether reactions should be included in correlation matrix |
bacs |
A boolean indicating whether bacteria should be included in correlation matrix |
substrates |
A boolean indicating whether substrates should be included in correlation matrix |
Returns correlation matrix which can be used for statistical analysis
correlation matrix
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model bac <- Bac(Ec_core,deathrate=0.05, minweight=0.05,growtype="exponential") #initialize a bacterium arena <- Arena(n=20,m=20) #initialize the environment arena <- addOrg(arena,bac,amount=10) #add 10 organisms arena <- addSubs(arena,40) #add all possible substances eval <- simEnv(arena,5) getCorrM(eval)