checkPhen_par {BacArena}R Documentation

Function for checking phenotypes in the environment

Description

The generic function checkPhen_par checks and adds the phenotypes of organisms in the environment.

Usage

checkPhen_par(object, org, cutoff = 1e-06, fbasol)

## S4 method for signature 'Arena'
checkPhen_par(object, org, cutoff = 1e-06, fbasol)

Arguments

object

An object of class Arena.

org

An object of class Organism.

cutoff

A number giving the cutoff for values of the objective function and fluxes of exchange reactions.

fbasol

Problem object according to the constraints and then solved with optimizeProb.


[Package BacArena version 1.8.2 Index]