addEssentialMed {BacArena}R Documentation

Add minimal medium of an organism to arena.

Description

The generic function addEssentialMed uses flux variability analysis to determine a essential growth medium components.

Usage

addEssentialMed(object, org, only_return = FALSE, limit = 10)

## S4 method for signature 'Arena'
addEssentialMed(object, org, only_return = FALSE, limit = 10)

Arguments

object

An object of class Arena.

org

An object of class Organism

only_return

Set true if essential metabolites should only be returned but not added to arena

limit

A metabolite is considered as essential if its remove whould decrease biomass growth below limit (between 0,100; default 10%)


[Package BacArena version 1.8.2 Index]