plotLOAF {BREADR} | R Documentation |

## plotLOAF

### Description

Plots all (sorted by increasing value) observed PMR values with maximum posterior probability classifications represented by colour and shape. Options include a cut off for the minimum number of overlapping SNPs, the max number of pairs to plot and x-axis font size.

### Usage

```
plotLOAF(in_tibble, nsnps_cutoff = NULL, N = NULL, fntsize = 7, verbose = TRUE)
```

### Arguments

`in_tibble` |
a tibble that is the output of the callRelatedness() function. |

`nsnps_cutoff` |
the minimum number of overlapping SNPs for which pairs are removed from the plot. If NULL, default is 500. |

`N` |
the number of (sorted by increasing PMR) pairs to plot. Avoids plotting all pairs (many of which are unrelated). |

`fntsize` |
the fontsize for the x-axis names. |

`verbose` |
if TRUE, then information about the plotting process is sent to the console |

### Value

a ggplot object

### Examples

```
relatedness_example
plotLOAF(relatedness_example)
```

[Package

*BREADR*version 1.0.1 Index]