MacrocnemisRawSeqs {BPEC}R Documentation

Sequences for the R.macrocnemis Brown Frog dataset

Description

Rana macrocnemis (Amphibia, Ranidae) dataset, the Near Eastern brown frog, from a transition zone of landscapes in Georgia, Caucasus. Contains the mtDNA sequences (cytochrome b) of the Brown Frog dataset used in the BPEC examples. It is called using data(MacrocnemisRawSeqs).

Usage

data(MacrocnemisRawSeqs)

Format

In total 40 mtDNA sequences of length 504 nucleotides each.

References

D. Tarkhnishvili, A. Hille and W. B?hme (2001) Humid forest refugia, speciation and secondary introgression between evolutionary lineages: differentiation in a Near Eastern brown frog, Rana macrocnemis. Biological Journal of the Linnean Society.

A. Hille, I. Manolopoulou and D. Tarkhnisvili (2015) Detecting landscape-dependent selection with Bayesian phylogeographic and ecological clustering: comparison of recombinant microsatellite and mtDNA haplotype data, (unpublished).

Examples

#to use the example dataset:
data(MacrocnemisRawSeqs)
rawSeqs <- MacrocnemisRawSeqs

[Package BPEC version 1.3.1 Index]