Utilities for the BIOM (Biological Observation Matrix) Format


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Documentation for package ‘BIOM.utils’ version 0.9

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applyBiomMethods BIOM examples and related utilities
as.character.biom Convert BIOM data from formal to basic type (export)
as.list.biom Convert BIOM data from formal to basic type (export)
as.matrix.biom Convert BIOM data from formal to basic type (export)
biom Attach formal type to BIOM data (import)
biom.character Attach formal type to BIOM data (import)
biom.list Attach formal type to BIOM data (import)
biom.matrix Attach formal type to BIOM data (import)
biom_fields Constants related to BIOM format
biom_format Constants related to BIOM format
biom_format_url Constants related to BIOM format
biom_matrix_element_types Constants related to BIOM format
biom_matrix_types Constants related to BIOM format
biom_table_types Constants related to BIOM format
buildBiomExamples BIOM examples and related utilities
dense2sparse Convert matrix data between dense, sparse, and list representations
dim.biom Row and column information of BIOM data
dimnames.biom Row and column information of BIOM data
dmat BIOM examples and related utilities
exampleBiomFile BIOM examples and related utilities
head.biom Display BIOM data in full or part
jtxt BIOM examples and related utilities
li1 BIOM examples and related utilities
li2 BIOM examples and related utilities
li3 BIOM examples and related utilities
li4 BIOM examples and related utilities
matrix2list Convert matrix data between dense, sparse, and list representations
metadata Row and column information of BIOM data
metadata.biom Row and column information of BIOM data
print.biom Display BIOM data in full or part
print.biomsummary Display BIOM data in full or part
smat BIOM examples and related utilities
sparse2dense Convert matrix data between dense, sparse, and list representations
str.biom Display BIOM data in full or part
summary.biom Display BIOM data in full or part
tail.biom Display BIOM data in full or part