plot.maxR {BIGL}R Documentation

Plot of maxR object

Description

Plot of maxR object

Usage

## S3 method for class 'maxR'
plot(
  x,
  main = "Contour plot for maxR",
  xlab = "Dose (Compound 1)",
  ylab = "Dose (Compound 2)",
  colorPalette = c("blue", "white", "red"),
  logScale = TRUE,
  zTransform = function(z) {     z },
  plevels = c(0.7, 0.8, 0.9, 0.95, 0.99, 0.999),
  cutoff = max(plevels),
  maxshow = NULL,
  ...
)

Arguments

x

Output of maxR. This can also be "maxR" element in the output of fitSurface.

main

Fixed non-moving title for the 3D plot

xlab

X axis label using font, size and color par(c("font.lab", "cex.lab", "col.lab")).

ylab

Y axis label, same font attributes as xlab.

colorPalette

Vector of color names for surface

logScale

Draw doses on log-scale (setting zeroes to be finite constant)

zTransform

Optional transformation function for z-axis. By default, identity function is used.

plevels

Probability levels used to generate a color scale

cutoff

Probability cutoff to use for range of colors

maxshow

Forced value for range of colors

...

Further arguments that are passed to format function for formatting of axis labels


[Package BIGL version 1.6.6 Index]