plot.ResponseSurface {BIGL}

Method for plotting response surface objects

Description

Method for plotting response surface objects

Usage

## S3 method for class 'ResponseSurface'
plot(
  x,
  color = c("z-score", "maxR", "occupancy", "effect-size"),
  greyScale = FALSE,
  ...
)

Arguments

x

Output of fitSurface

color

Character indicating on what values surface coloring will be based.

If color = "z-score", surface coloring will be based on median of standardized off-axis Z-scores. Median function can be replaced by other function using an optional colorfun argument which will be passed to plotResponseSurface. Color breaks are determined here by standard deviation of off-axis Z-scores. For color = "maxR", coloring will be based on values of maxR statistic and the quantile of its distribution (bootstrapped or not). If color = "occupancy", coloring will be based on calculated occupancy rate for the respective dose combination. If color = "effect-size", coloring will be based on effect size for the respective dose combination.

greyScale

If greyScale = TRUE, then plot is in grey scale, otherwise in colour.

...

Further parameters passed to plotResponseSurface. colorBy argument in this method is computed automatically and thus cannot be passed to plotResponseSurface.