GLSconvert {BIGDAWG}

Genotype List String Conversion

Description

Main Workhorse wrapper for cross converting columnar table to GL string representaion.

Usage

GLSconvert(
  Data,
  Convert,
  File.Output = "txt",
  System = "HLA",
  HZY.Red = FALSE,
  DRB345.Check = FALSE,
  Strip.Prefix = TRUE,
  Abs.Fill = FALSE,
  Cores.Lim = 1L
)

Arguments

Data

String File name or R Data Frame.

Convert

String Direction for conversion.

File.Output

String Type of File.Output.

System

String Genetic system (HLA or KIR) of the data being converted

HZY.Red

Logical Reduction of homozygote genotypes to single allele.

DRB345.Check

Logical Check DR haplotypes for consistency and flag unusual haplotypes.

Strip.Prefix

Logical Should System/Locus prefixes be stripped from table data.

Abs.Fill

Logical Should absent loci special designations be used.

Cores.Lim

Integer How many cores can be used.