Check.Params {BIGDAWG}

Check Input Parameters

Description

Check input parameters for invalid entries.

Usage

Check.Params(
  HLA,
  Loci.Set,
  Exon,
  All.Pairwise,
  Trim,
  Res,
  EVS.rm,
  Missing,
  Cores.Lim,
  Return,
  Output,
  Merge.Output,
  Verbose
)

Arguments

HLA

Logical indicating whether data is HLA class I/II genotyping data only.

Loci.Set

Input list defining which loci to use for analyses (combinations permitted).

Exon

Numeric Exon(s) for targeted amino acid analysis.

All.Pairwise

Logical indicating whether all pairwise loci should be analyzed in haplotype analysis.

Trim

Logical indicating if HLA alleles should be trimmed to a set resolution.

Res

Numeric setting what desired resolution to trim HLA alleles.

EVS.rm

Logical indicating if expression variant suffixes should be removed.

Missing

Numeric setting allowable missing data for running analysis (may use "ignore").

Cores.Lim

Integer setting the number of cores accessible to BIGDAWG (Windows limit is 1 core).

Return

Logical Should analysis results be returned as list.

Output

Logical Should analysis results be written to output directory.

Merge.Output

Logical Should analysis results be merged into a single file for easy access.

Verbose

Logical Should a summary of each analysis be displayed in console.

Note

This function is for internal use only.