searchBeid {BED}

Search a BEID

Description

Search a BEID

Usage

searchBeid(x, clean_id_search = TRUE, clean_name_search = TRUE)

Arguments

x

a character value to search

clean_id_search

clean x to avoid error during ID search. Default: TRUE. Set it to false if you're sure of your lucene query.

clean_name_search

clean x to avoid error during ID search. Default: TRUE. Set it to false if you're sure of your lucene query.

Value

NULL if there is not any match or a data.frame with the following columns:

• Value: the matching term

• From: the type of the matched term (e.g. BESymbol, GeneID...)

• BE: the matching biological entity (BE)

• BEID: the BE identifier

• Database: the BEID reference database

• Preferred: TRUE if the BEID is considered as a preferred identifier

• Symbol: BEID canonical symbol

• Name: BEID name

• Entity: technical BE identifier

• GeneID: Corresponding gene identifier

• Gene_DB: Gene ID database

• Preferred_gene: TRUE if the GeneID is considered as a preferred identifier

• Gene_symbol: Gene symbol

• Gene_name: Gene name

• Gene_entity: technical gene identifier

• Organism: gene organism (scientific name)