largestBeSource {BED}

Autoselect source of biological entity identifiers

Description

The selection is based on direct identifiers

Usage

largestBeSource(
  be,
  organism,
  rel = NA,
  restricted = TRUE,
  exclude = c("BEDTech_gene", "BEDTech_transcript")
)

Arguments

be

the biological entity under focus

organism

the organism under focus

rel

a type of relationship to consider in the query (e.g. "is_member_of") in order to focus on specific information. If NA (default) all be are taken into account whatever their available relationships.

restricted

boolean indicating if the results should be restricted to current version of to BEID db. If FALSE former BEID are also taken into account.

exclude

database to exclude from possible selection. Used to filter out technical database names such as "BEDTech_gene" and "BEDTech_transcript" used to manage orphan IDs (not linked to any gene based on information taken from sources)

Value

The name of the selected source. The selected source will be the one providing the largest number of current identifiers.

See Also

listBeIdSources

Examples

## Not run: 
largestBeSource(be="Gene", "Mus musculus")

## End(Not run)