guessIdScope {BED} | R Documentation |
Guess biological entity (BE), database source and organism of a vector of identifiers.
Description
Guess biological entity (BE), database source and organism of a vector of identifiers.
Usage
guessIdScope(ids, be, source, organism, tcLim = 100)
guessIdOrigin(...)
Arguments
ids |
a character vector of identifiers |
be |
one BE or "Probe". Guessed if not provided |
source |
the BE ID database or "Symbol" if BE or the probe platform if Probe. Guessed if not provided |
organism |
organism name. Guessed if not provided |
tcLim |
number of identifiers to check to guess origin for the whole set. Inf ==> no limit. |
... |
params for |
Value
A list (NULL if no match):
-
be: a character vector of length 1 providing the best BE guess (NA if inconsistent with user input: be, source or organism)
-
source: a character vector of length 1 providing the best source guess (NA if inconsistent with user input: be, source or organism)
*organism$: a character vector of length 1 providing the best organism guess (NA if inconsistent with user input: be, source or organism)
The "details" attribute ('attr(x, "details")“) is a data frame providing numbers supporting the guess
Functions
-
guessIdOrigin()
: Deprecated version of guessIdScope
Examples
## Not run:
guessIdScope(ids=c("10", "100"))
## End(Not run)