getDirectOrigin {BED}R Documentation

Get the direct origin of BE identifiers

Description

The origin is directly taken as provided by the original database. This function does not return indirect relationships.

Usage

getDirectOrigin(
  ids,
  sources = NULL,
  process = c("is_expressed_as", "is_translated_in", "codes_for")
)

Arguments

ids

list of product identifiers

sources

a character vector corresponding to the possible product ID sources. If NULL (default), all sources are considered

process

the production process among: "is_expressed_as", "is_translated_in", "codes_for".

Value

a data.frame with the following columns:

The process is also returned as an attribute of the data.frame.

See Also

getDirectOrigin, convBeIds

Examples

## Not run: 
oriId <- c("XP_016868427", "NP_001308979")
res <- getDirectOrigin(
   ids=oriId,
   source="RefSeq_peptide",
   process="is_translated_in"
)
attr(res, "process")

## End(Not run)


[Package BED version 1.5.0 Index]