getBeIdNameTable {BED} | R Documentation |
Get a table of biological entity (BE) identifiers and names
Description
Get a table of biological entity (BE) identifiers and names
Usage
getBeIdNameTable(
be,
source,
organism,
restricted,
entity = TRUE,
verbose = FALSE,
recache = FALSE,
filter = NULL
)
Arguments
be |
one BE |
source |
the BE ID database |
organism |
organism name |
restricted |
boolean indicating if the results should be restricted to direct names |
entity |
boolean indicating if the technical ID of BE should be returned |
verbose |
boolean indicating if the CQL query should be displayed |
recache |
boolean indicating if the CQL query should be run even if the table is already in cache |
filter |
character vector on which to filter id. If NULL (default), the result is not filtered: all IDs are taken into account. |
Value
a data.frame with the following fields:
-
id: the from BE ID
-
name: the BE name
-
direct: false if the symbol is not directly associated to the BE ID
-
entity: (optional) the technical ID of to BE
See Also
getBeIdNames, getBeIdSymbolTable
Examples
## Not run:
getBeIdNameTable(
be="Gene",
source="EntrezGene",
organism="human"
)
## End(Not run)
[Package BED version 1.5.2 Index]