dumpUniprotDb {BED} | R Documentation |
Feeding BED: Dump and preprocess flat dat files fro Uniprot
Description
Not exported to avoid unintended modifications of the DB.
Usage
dumpUniprotDb(
taxOfInt,
release,
ddir,
ftp = "ftp://ftp.expasy.org/databases/uniprot",
env = parent.frame(n = 1)
)
Arguments
taxOfInt |
the organism of interest. Only human ("9606"), mouse ("10090") and rat ("10116") are supported |
release |
the release of interest (check if already downloaded) |
ddir |
path to the directory where the data should be saved |
ftp |
location of the ftp site |
env |
the R environment in which to load the tables when built |
[Package BED version 1.5.0 Index]