dumpEnsCore {BED}

Feeding BED: Dump table from the Ensembl core database

Description

Not exported to avoid unintended modifications of the DB.

Usage

dumpEnsCore(
  organism,
  release,
  gv,
  ddir,
  toDump = c("attrib_type", "gene_attrib", "transcript", "external_db", "gene",
    "translation", "external_synonym", "object_xref", "xref", "stable_id_event"),
  env = parent.frame(n = 1)
)

Arguments

organism

the organism to download (e.g. "Homo sapiens").

release

Ensembl release (e.g. "83")

gv

version of the genome (e.g. "38")

ddir

path to the directory where the data should be saved

toDump

the list of tables to download

env

the R environment in which to load the tables when downloaded