beIDsToAllScopes {BED}

Find all BEID and ProbeID corresponding to a BE

Description

Find all BEID and ProbeID corresponding to a BE

Usage

beIDsToAllScopes(
  beids,
  be,
  source,
  organism,
  entities = NULL,
  canonical_symbols = TRUE
)

Arguments

beids

a character vector of gene identifiers

be

one BE. Guessed if not provided

source

the source of gene identifiers. Guessed if not provided

organism

the gene organism. Guessed if not provided

entities

a numeric vector of gene entity. If NULL (default), beids, source and organism arguments are used to identify BEs. Be carefull when using entities as these identifiers are not stable.

canonical_symbols

return only canonical symbols (default: TRUE).

Value

A data.frame with the following fields:

• value: the identifier

• be: the type of BE

• source: the source of the identifier

• organism: the BE organism

• symbol: canonical symbol of the identifier

• BE_entity: the BE entity input

• BEID (optional): the BE ID input

• BE_source (optional): the BE source input