germlineReconstr {BCellMA}R Documentation

Function to reconstruction of germline sequencies based on IMGT outputs.

Description

Function to reconstruction of germline sequencies based on IMGT outputs.

Usage

germlineReconstr(data_tab2, data_tab7)

Arguments

data_tab2

Column V_Region in the IMGT table 2

data_tab7

Column V_Region in the IMGT table 7

Value

output is a vector of germline sequencies.

References

Brochet X., Lefranc MP., and Giudicelli V. IMGT/V-QUEST: the highly customized andintegrated system for IG and TR standardized V-Jand V-D-J sequence analysis.NucleicAcids Res., 36(Web Server issue):W503 - W508, 2008. doi: 10.1093/nar/gkn316

Examples

data(IMGTtab2)
data(IMGTtab7)
germline<-germlineReconstr(IMGTtab2$V_REGION, IMGTtab7$V_REGION)
germline

[Package BCellMA version 0.3.4 Index]