gene_comb_plot {BCellMA}R Documentation

Plot of gene/gene ratios of two gene families

Description

Gene/gene ratios of two gene families can be plotted as an gene_comb_plot().

Usage

gene_comb_plot(data, text, legend_position, a, b)

Arguments

data

Results from the function gene_comb_funk().

text

The legend of the plot.

legend_position

The position of the legend. It can be "none","left", "right", "bottom", "top".

a

The angle of X-axis legend.

b

The distance from X-axis to legend.

Value

Output is the plot of gene/gene ratios of two gene families.

References

Bischof J. and Ibrahim SM. bcRep: R Package for Comprehensive Analysis of B Cell Receptor Repertoire Data. PLoS One. 11(8):e0161569, 2016. doi: 10.1371/journal.pone.0161569.

Examples

data(IMGTtab1)
gane_comb<-gene_comb_funk(family1 = IMGTtab1$V_GENE_and_allele,
                          family2 = IMGTtab1$J_GENE_and_allele)
gene_comb_plot(gane_comb, "Plot of IGHV and IGHJ ratio", legend_position = "right", a = 35, b = 0.5)

[Package BCellMA version 0.3.4 Index]