B Cell Receptor Somatic Hyper Mutation Analysis


[Up] [Top]

Documentation for package ‘BCellMA’ version 0.3.4

Help Pages

aa_cdr3_dist Average frequency of nucleotide mutations resulting in amino acid substitution in CDR3
aa_dist Average frequency of nucleotide mutations resulting in amino acid substitution in FRs and CDRs
aa_plot Plot of average frequency of nucleotide mutations resulting in amino acid substitution
gene_comb_funk gene/gene ratios of two gene families
gene_comb_plot Plot of gene/gene ratios of two gene families
germlineReconstr Function to reconstruction of germline sequencies based on IMGT outputs.
IMGTtab1 IMGT Table 1
IMGTtab2 IMGT Table 2
IMGTtab7 IMGT Table 7
IMGTtab8 IMGT Table 8
Klassen Klassen
lengthCDR3 Frequency distribution of the CDR3 length
na_funktion The function to check for reconsrtruction errors
nucleotide_mutation The frequencies of nucleotide mutations and the frequencies of transition and transversion
targetingMatrix Function to the calculation of the number of Nucleotids at three positions before and after a mutation
targeting_motiv Function to calculate the difference at three positions before and after a mutation to identify the hotspot motifs
targeting_motive_plot Polt of the difference at three positions before and after a mutation to identify the hotspot motifs.