summary.bce {BCE} | R Documentation |

basic statistics of a bce object

## S3 method for class 'bce' summary(object, confInt = 2/3, ...)

`object ` |
a bce-object, output of the function bce1() or BCE(). |

`confInt ` |
confidence interval of values of composion matrix and ratio matrix. |

`... ` |
additional arguments affecting the summary produced. |

if object is output of the function bce1():

a list containing:

`meanA ` |
Average solution of the ratio matrix,found through MCMC. |

`meanX ` |
Average solution of the composition matrix, found through MCMC. |

`bestA ` |
Ratio matrix for which the posterior probability is maximal. |

`bestX ` |
Composition matrix for which the posterior probability is maximal. |

`sdA ` |
standard deviation of the ratio matrix. |

`sdX ` |
standard deviation of the composition matrix. |

`lastA ` |
Last value for the ratio matrix in the MCMC run. |

`lastX ` |
Last value for the composition matrix in the MCMC run. |

`medianA ` |
Median of the ratio matrix. |

`medianX ` |
Median of the composition matrix. |

`ubA ` |
Upper boundary of the confidence interval of the elements of the ratio matrix. |

`ubX ` |
Upper boundary of the confidence interval of the elements of the composition matrix. |

`lbA ` |
Lower boundary of the confidence interval of the elements of the ratio matrix. |

`lbX ` |
Lower boundary of the confidence interval of the elements of the composition matrix. |

`covar ` |
Covariance matrix of all elements of A and X. |

if object is output of the function BCE():

a list containing:

`firstX ` |
X determined through least squares regression from the initial ratio matrix and the data matrix. |

`bestRat ` |
Ratio matrix for which the posterior probability is maximal. |

`bestX ` |
Composition matrix for which the posterior probability is maximal. |

`bestp ` |
Maximal posterior probability. |

`bestDat ` |
Product of |

`meanRat ` |
Means of the elements of the ratio matrix. |

`sdRat ` |
Standard deviation of the elements of the ratio matrix. |

`lbRat ` |
Lower boundary of the confidence interval of the elements of the ratio matrix. |

`ubRat ` |
Upper boundary of the confidence interval of the elements of the ratio matrix. |

`covRat ` |
Covariance matrix of the elements of the ratio matrix. |

`meanX ` |
Means of the elements of the composition matrix. |

`sdX ` |
Standard deviation of the elements of the composition matrix. |

`lbX ` |
Lower boundary of the confidence interval of the elements of the composition matrix. |

`ubX ` |
Upper boundary of the confidence interval of the elements of the composition matrix. |

`covX ` |
Covariance matrix of the elements of the composition matrix. |

Karel Van den Meersche

`bce1`

, `BCE`

, `plot.bce`

,
`export.bce`

, `pairs.bce`

# bceOutput is an example output based on bceInput summary(bceOutput)

[Package *BCE* version 2.1 Index]