summary.bce {BCE}R Documentation

summary BCE

Description

basic statistics of a bce object

Usage

## S3 method for class 'bce'
summary(object, confInt = 2/3, ...)

Arguments

object

a bce-object, output of the function bce1() or BCE().

confInt

confidence interval of values of composion matrix and ratio matrix.

...

additional arguments affecting the summary produced.

Value

if object is output of the function bce1():

a list containing:

meanA

Average solution of the ratio matrix,found through MCMC.

meanX

Average solution of the composition matrix, found through MCMC.

bestA

Ratio matrix for which the posterior probability is maximal.

bestX

Composition matrix for which the posterior probability is maximal.

sdA

standard deviation of the ratio matrix.

sdX

standard deviation of the composition matrix.

lastA

Last value for the ratio matrix in the MCMC run.

lastX

Last value for the composition matrix in the MCMC run.

medianA

Median of the ratio matrix.

medianX

Median of the composition matrix.

ubA

Upper boundary of the confidence interval of the elements of the ratio matrix.

ubX

Upper boundary of the confidence interval of the elements of the composition matrix.

lbA

Lower boundary of the confidence interval of the elements of the ratio matrix.

lbX

Lower boundary of the confidence interval of the elements of the composition matrix.

covar

Covariance matrix of all elements of A and X.

if object is output of the function BCE():

a list containing:

firstX

X determined through least squares regression from the initial ratio matrix and the data matrix.

bestRat

Ratio matrix for which the posterior probability is maximal.

bestX

Composition matrix for which the posterior probability is maximal.

bestp

Maximal posterior probability.

bestDat

Product of bestRat and bestX.

meanRat

Means of the elements of the ratio matrix.

sdRat

Standard deviation of the elements of the ratio matrix.

lbRat

Lower boundary of the confidence interval of the elements of the ratio matrix.

ubRat

Upper boundary of the confidence interval of the elements of the ratio matrix.

covRat

Covariance matrix of the elements of the ratio matrix.

meanX

Means of the elements of the composition matrix.

sdX

Standard deviation of the elements of the composition matrix.

lbX

Lower boundary of the confidence interval of the elements of the composition matrix.

ubX

Upper boundary of the confidence interval of the elements of the composition matrix.

covX

Covariance matrix of the elements of the composition matrix.

Author(s)

Karel Van den Meersche

See Also

bce1, BCE, plot.bce, export.bce, pairs.bce

Examples

# bceOutput is an example output based on bceInput

summary(bceOutput)

[Package BCE version 2.1 Index]